Info • Alternaria rosae MPI-PUGE-AT-0040 v1.0


[March 2018] The Alternaria rosae DTO 242-I4 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Alternaria rosae v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.83
Sequencing read coverage depth 138.21x
# of contigs 52
# of scaffolds 52
# of scaffolds >= 2Kbp 51
Scaffold N50 4
Scaffold L50 (Mbp) 3.28
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.61, 5.03, 3.29

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 27676 26692 96.4%
Ests est.fasta 116397237 113468188 97.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1811 1585
transcript 1684 1473
exon 632 408
intron 78 55
protein length (aa) 474 399
exons per gene 2.67 2
# of gene models 12640


Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.