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Info • Alternaria tangelonis BMP2327

Status

The genome sequence and gene prediction of Alternaria tangelonis BMP2327 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria tangelonis BMP2327 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.77
Sequencing read coverage depth unknown
# of contigs 1970
# of scaffolds 1675
# of scaffolds >= 2Kbp 1441
Scaffold N50 270
Scaffold L50 (Mbp) 0.04
# of gaps 295
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.20, 0.19, 0.16


Gene Models ExternalModels
length (bp) of: average median
gene 1516 1290
transcript 1393 1176
exon 558 335
intron 84 56
description:
protein length (aa) 464 392
exons per gene 2.50 2
# of gene models 12639


Collaborators

Christopher B. Lawrence, Virgina Tech, USA

Funding

This project was not sequenced at the JGI.