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Info • Alternaria tenuissima BMP0304

Status

The genome sequence and gene prediction of Alternaria tenuissima BMP0304 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria tenuissima BMP0304 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.36
Sequencing read coverage depth unknown
# of contigs 224
# of scaffolds 218
# of scaffolds >= 2Kbp 158
Scaffold N50 18
Scaffold L50 (Mbp) 0.66
# of gaps 6
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.10, 1.33, 1.28


Gene Models ExternalModels
length (bp) of: average median
gene 1592 1346
transcript 1469 1233
exon 576 338
intron 81 56
description:
protein length (aa) 490 411
exons per gene 2.55 2
# of gene models 12276


Collaborators

Christopher B. Lawrence, Virgina Tech, USA

Funding

This project was not sequenced at the JGI.