Info • Alternaria mali BMP3063


The genome sequence and gene prediction of Alternaria mali BMP3063 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria mali BMP3063 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.61
Sequencing read coverage depth unknown
# of contigs 2981
# of scaffolds 2720
# of scaffolds >= 2Kbp 2312
Scaffold N50 511
Scaffold L50 (Mbp) 0.02
# of gaps 261
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.08, 0.08, 0.07

Gene Models ExternalModels
length (bp) of: average median
gene 1483 1258
transcript 1363 1149
exon 555 333
intron 84 56
protein length (aa) 454 383
exons per gene 2.45 2
# of gene models 12727


Christopher B. Lawrence, Virgina Tech, USA


This project was not sequenced at the JGI.