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Info • Alternaria mali BMP3064

Status

The genome sequence and gene prediction of Alternaria mali BMP3064 have not been determined by the Joint Genome Institute (JGI), but were provided by Christopher Lawrence and Ha X. Dang in Aug 2019 (Alternaria Genomes Database - AGD). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. We have removed small scaffolds (<1kb) without gene models, and it thus differs from the original data present in the AGD. Please note that this copy of the genome is not maintained by the original authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Alternaria mali BMP3064 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.33
Sequencing read coverage depth unknown
# of contigs 2002
# of scaffolds 1687
# of scaffolds >= 2Kbp 1456
Scaffold N50 297
Scaffold L50 (Mbp) 0.04
# of gaps 315
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.20, 0.14, 0.13


Gene Models ExternalModels
length (bp) of: average median
gene 1540 1305
transcript 1418 1194
exon 566 335
intron 83 56
description:
protein length (aa) 473 398
exons per gene 2.50 2
# of gene models 12715


Collaborators

Christopher B. Lawrence, Virgina Tech, USA

Funding

This project was not sequenced at the JGI.