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Info • Amanita muscaria Koide v1.0

Status

v1.0 (August 2012): The assembly release version 1.0 of Amanita muscaria Koide was sequenced using Illumina technology and assembled using the AllPathsLG assembler (release version R42328).

Summary statistics for the Amanita muscaria Koide v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.70
Sequencing read coverage depth 125.7x
# of contigs 3814
# of scaffolds 1101
# of scaffolds >= 2Kbp 791
Scaffold N50 54
Scaffold L50 (Mbp) 0.17
# of gaps 2713
% of scaffold length in gaps 12.0%
Three largest Scaffolds (Mbp) 1.49, 1.10, 1.08


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests Assembled Illumina ESTs (using RNNotator) 60097 51381 85.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1396 1039
transcript 1147 873
exon 253 157
intron 73 54
description:
protein length (aa) 328 233
exons per gene 4.54 3
# of gene models 18153


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.