Info • Amniculicola lignicola CBS 123094 v1.0


[March 2014] The Amniculicola lignicola genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Amniculicola lignicola CBS 123094 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.58
Sequencing read coverage depth 99x
# of contigs 1274
# of scaffolds 510
# of scaffolds >= 2Kbp 411
Scaffold N50 36
Scaffold L50 (Mbp) 0.44
# of gaps 764
% of scaffold length in gaps 1.5%
Three largest Scaffolds (Mbp) 1.72, 1.42, 1.09

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 29967 29569 98.7%

Gene Models FilteredModels1
length (bp) of: average median
gene 1619 1365
transcript 1466 1233
exon 549 345
intron 94 57
protein length (aa) 425 344
exons per gene 2.67 2
# of gene models 15590


Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.