Info • Amylostereum chailletii DWAch2 v1.0

Status

[July 2017] The Amylostereum chailletii DWAch2 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Amylostereum chailletii DWAch2 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.20
Sequencing read coverage depth 191.1x
# of contigs 4879
# of scaffolds 2032
# of scaffolds >= 2Kbp 1637
Scaffold N50 238
Scaffold L50 (Mbp) 0.04
# of gaps 2847
% of scaffold length in gaps 7.0%
Three largest Scaffolds (Mbp) 0.40, 0.27, 0.26


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 91687 76483 83.4%
Ests est.fasta 254410101 238491871 93.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1668 1423
transcript 1334 1132
exon 237 149
intron 74 58
description:
protein length (aa) 394 320
exons per gene 5.64 4
# of gene models 14750


Collaborators

Francis Martin, INRA Nancy, France

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.