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Info • Amylocystis lapponica SKaAmylap13 v1.0

Status

[December 2017] The Amylocystis lapponica SKaAmylap13 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Amylocystis lapponica v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.50
Sequencing read coverage depth 281.28x
# of contigs 801
# of scaffolds 801
# of scaffolds >= 2Kbp 776
Scaffold N50 63
Scaffold L50 (Mbp) 0.16
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.00, 0.89, 0.73


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 61370 55696 90.8%
Ests est.fasta 127893174 121935151 95.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1868 1618
transcript 1508 1305
exon 236 149
intron 69 57
description:
protein length (aa) 438 360
exons per gene 6.39 5
# of gene models 11559


Collaborators

Francis Martin, INRA Nancy, France

Sundy Maurice, University of Oslo

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.