Info • Annulohypoxylon sp. FL0455 v1.0

Status

[June 2020] The Annulohypoxylon sp. FL0455 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Annulohypoxylon sp. FL0455 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.29
Sequencing read coverage depth 113.22x
# of contigs 11
# of scaffolds 11
# of scaffolds >= 2Kbp 11
Scaffold N50 5
Scaffold L50 (Mbp) 4.09
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.97, 4.65, 4.64


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48791 47766 97.9%
Ests est.fasta 219007888 217895150 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2040 1813
transcript 1873 1653
exon 633 394
intron 87 65
description:
protein length (aa) 493 416
exons per gene 2.96 3
# of gene models 11162


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.