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Info • Anaeromyces robustus v1.0

Status

[October 2015] The Anaeromyces sp. S4 genome was sequenced using the PacBio platform and assembled together with Falcon+FinisherSC.

Summary statistics for the Anaeromyces sp. S4 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 71.69
Sequencing read coverage depth 20x
# of contigs 1035
# of scaffolds 1035
# of scaffolds >= 2Kbp 993
Scaffold N50 158
Scaffold L50 (Mbp) 0.14
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.67, 0.50, 0.46


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 17127 15190 88.7%


Gene Models FilteredModels3
length (bp) of: average median
gene 2393 1848
transcript 1657 1242
exon 355 153
intron 203 154
description:
protein length (aa) 510 364
exons per gene 4.67 3
# of gene models 12832


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.