Info • Annulohypoxylon maeteangense CBS 123835 v1.0

Status

[August 2019] The Annulohypoxylon maeteangense CBS 123835 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Annulohypoxylon maeteangense CBS 123835 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.25
Sequencing read coverage depth 145.662734429x
# of contigs 69
# of scaffolds 64
# of scaffolds >= 2Kbp 62
Scaffold N50 8
Scaffold L50 (Mbp) 1.64
# of gaps 5
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.36, 3.21, 2.79


Note: Low EST mapping was attributed to the presence of ~70% rRNA.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36640 35360 96.5%
Ests est.fasta 269724464 88591813 32.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 2038 1804
transcript 1870 1649
exon 628 396
intron 87 65
description:
protein length (aa) 494 416
exons per gene 2.98 3
# of gene models 11000


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.