Info • Annulohypoxylon minutellum CBS 135445 v1.0

Status

[July 2019] The Annulohypoxylon minutellum CBS 135445 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Annulohypoxylon minutellum CBS 135445 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.66
Sequencing read coverage depth 173.185705517x
# of contigs 543
# of scaffolds 537
# of scaffolds >= 2Kbp 458
Scaffold N50 72
Scaffold L50 (Mbp) 0.14
# of gaps 6
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.66, 0.58, 0.50


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39925 38458 96.3%
Ests est.fasta 164697190 162502823 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 2013 1780
transcript 1841 1613
exon 619 388
intron 89 65
description:
protein length (aa) 481 401
exons per gene 2.97 3
# of gene models 10913


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.