Info • Annulohypoxylon stygium FL0470 v1.0

Status

[July 2019] The Annulohypoxylon stygium FL0470 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Annulohypoxylon stygium FL0470 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.54
Sequencing read coverage depth 156.360399501x
# of contigs 284
# of scaffolds 278
# of scaffolds >= 2Kbp 233
Scaffold N50 22
Scaffold L50 (Mbp) 0.42
# of gaps 6
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.88, 1.77, 1.40


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48997 46599 95.1%
Ests est.fasta 216953068 214935148 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 2004 1778
transcript 1841 1619
exon 629 396
intron 86 64
description:
protein length (aa) 488 412
exons per gene 2.93 2
# of gene models 11880


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.