Info • Annulohypoxylon truncatum CBS 140777 v1.0

Status

[July 2019] The Annulohypoxylon truncatum CBS 140777 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Annulohypoxylon truncatum CBS 140777 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.07
Sequencing read coverage depth 151.080912596x
# of contigs 137
# of scaffolds 130
# of scaffolds >= 2Kbp 116
Scaffold N50 16
Scaffold L50 (Mbp) 0.76
# of gaps 7
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.28, 1.73, 1.42


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52550 50946 96.9%
Ests est.fasta 182713773 181908116 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2053 1834
transcript 1884 1674
exon 636 398
intron 88 65
description:
protein length (aa) 491 415
exons per gene 2.96 3
# of gene models 11151


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.