Status
(May 2016) The Anomoporia bombycina ATCC 64506 genome was sequenced using Illumina technology, assembled with AllPathsLG version R49403, and annotated with the JGI annotation pipeline. The mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Anomoporia bombycina ATCC 64506
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 44.48 |
| Sequencing read coverage depth | 126.1x |
| # of contigs | 4856 |
| # of scaffolds | 1600 |
| # of scaffolds >= 2Kbp | 1308 |
| Scaffold N50 | 174 |
| Scaffold L50 (Mbp) | 0.07 |
| # of gaps | 3256 |
| % of scaffold length in gaps | 11.4% |
| Three largest Scaffolds (Mbp) | 0.66, 0.57, 0.36 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 94508 | 90134 | 95.4% |
| Ests | est.fasta | 163938804 | 150861714 | 92.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1605 | 1326 |
| transcript | 1287 | 1050 |
| exon | 225 | 144 |
| intron | 69 | 58 |
| description: | ||
| protein length (aa) | 379 | 298 |
| exons per gene | 5.73 | 4 |
| # of gene models | 14617 |
Collaborators
- Jon Magnuson, Pacific Northwest National Laboratory
- Joseph W. Spatafora, Oregon State University
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Amylocorticiales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
