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Info • Anthostoma avocetta NRRL 3190 v1.0

Status

Assembly v1 (September 2013) is a standard draft assembly of Ilumina gDNA reads. A total of 786 scaffolds and 56.2 Mbp were assembled using AllPathsLG.

Summary statistics for the Anthostoma avocetta NRRL 3190 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.23
Sequencing read coverage depth 117.7x
# of contigs 1038
# of scaffolds 786
# of scaffolds >= 2Kbp 525
Scaffold N50 15
Scaffold L50 (Mbp) 1.12
# of gaps 252
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 4.77, 3.57, 2.65


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 30985 30269 97.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1711 1452
transcript 1498 1278
exon 511 306
intron 112 67
description:
protein length (aa) 436 354
exons per gene 2.93 2
# of gene models 15755


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.