Status
Assembly v1 (September 2013) is a standard draft assembly of Ilumina gDNA reads. A total of 786 scaffolds and 56.2 Mbp were assembled using AllPathsLG.
Summary statistics for the Anthostoma avocetta NRRL 3190
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 56.23 |
| Sequencing read coverage depth | 117.7x |
| # of contigs | 1038 |
| # of scaffolds | 786 |
| # of scaffolds >= 2Kbp | 525 |
| Scaffold N50 | 15 |
| Scaffold L50 (Mbp) | 1.12 |
| # of gaps | 252 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 4.77, 3.57, 2.65 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 30985 | 30269 | 97.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1711 | 1452 |
| transcript | 1498 | 1278 |
| exon | 511 | 306 |
| intron | 112 | 67 |
| description: | ||
| protein length (aa) | 436 | 354 |
| exons per gene | 2.93 | 2 |
| # of gene models | 15755 |
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
