Info • Antrodia serialis Sig1Antser10 v1.0


[May 2017] The Antrodia serialis Sig1Antser10 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Antrodia serialis Sig1Antser10 was identified to be a dikaryon. Therefore we have created 'primary' and 'secondary' allele gene model tracks in the genome browser, as well as provided downloadable files and BLAST databases for these allelic variants.

Summary statistics for the Antrodia serialis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 66.69
Sequencing read coverage depth 119.21x
# of contigs 893
# of scaffolds 893
# of scaffolds >= 2Kbp 883
Scaffold N50 76
Scaffold L50 (Mbp) 0.19
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.85, 1.83, 1.67

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 88008 83625 95.0%
Ests est.fasta 83613760 82709883 98.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1739 1479
transcript 1382 1180
exon 231 148
intron 74 58
protein length (aa) 400 327
exons per gene 5.98 5
# of gene models 17406


Sundy Maurice, Inger Skrede, and Håvard Kauserud, University of Oslo

Otto Miettinen, University of Helsinki

Francis Martin, INRA Nancy, France

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.