Status
[May 2017] The Antrodia serialis Sig1Antser10 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Antrodia serialis Sig1Antser10 was identified to be a dikaryon. Therefore we have created 'primary' and 'secondary' allele gene model tracks in the genome browser, as well as provided downloadable files and BLAST databases for these allelic variants.
Summary statistics for the Antrodia serialis v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 66.69 |
| Sequencing read coverage depth | 119.21x |
| # of contigs | 893 |
| # of scaffolds | 893 |
| # of scaffolds >= 2Kbp | 883 |
| Scaffold N50 | 76 |
| Scaffold L50 (Mbp) | 0.19 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.85, 1.83, 1.67 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 88008 | 83625 | 95.0% |
| Ests | est.fasta | 83613760 | 82709883 | 98.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1739 | 1479 |
| transcript | 1382 | 1180 |
| exon | 231 | 148 |
| intron | 74 | 58 |
| description: | ||
| protein length (aa) | 400 | 327 |
| exons per gene | 5.98 | 5 |
| # of gene models | 17406 |
Collaborators
Sundy Maurice, Inger Skrede, and Håvard Kauserud, University of Oslo
Otto Miettinen, University of Helsinki
Francis Martin, INRA Nancy, France
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, MartÃnez AT, Baldrian P, Å tursová M, MartÃnez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423
Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, MartÃnez AT, Baldrian P, Å tursová M, MartÃnez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
