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Info • Antrodia sinuosa LB1 v1.0

Status

The Antrodia sinuosa LB1 Standard Draft genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al., 2010).

Summary statistics for the Antrodia sinuosa LB1 v1.0 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.17
Sequencing read coverage depth 128.1
# of contigs 1482
# of scaffolds 1387
# of scaffolds >= 2Kbp 1051
Scaffold N50 161
Scaffold L50 (Mbp) 0.06
# of gaps 95
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.38, 0.31, 0.27


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_contigs 38599 36034 93.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1809 1535
transcript 1470 1241
exon 241 148
intron 69 58
description:
protein length (aa) 419 341
exons per gene 6.09 5
# of gene models 11327


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.