Info • Anthracobia sp. CZU v1.0

Status

[March 2023] The Anthracobia sp. CZU genome was sequenced using PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. The low percentage of RNA contigs mapped to the genome is likely due to bacterial contamination.

Genome Assembly
Genome Assembly size (Mbp) 53.43
Sequencing read coverage depth 169.64x
# of contigs 104
# of scaffolds 104
# of scaffolds >= 2Kbp 104
Scaffold N50 20
Scaffold L50 (Mbp) 0.91
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.08, 2.56, 1.96


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 91175 36760 40.3%
Ests est.fasta 178626194 74007949 41.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1650 1396
transcript 1462 1218
exon 457 283
intron 87 59
description:
protein length (aa) 420 334
exons per gene 3.20 3
# of gene models 14194


Collaborators

  • Tom Bruns at University of California Berkeley

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.