Info • Anthostomella tomicoides 1013 v1.0

Status

[September 2020] The Anthostomella tomicoides 1013 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Anthostomella tomicoides 1013 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 54.28
Sequencing read coverage depth 112.92x
# of contigs 101
# of scaffolds 93
# of scaffolds >= 2Kbp 91
Scaffold N50 13
Scaffold L50 (Mbp) 1.15
# of gaps 8
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.87, 4.01, 3.30


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44491 43039 96.7%
Ests est.fasta 170606899 169242018 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1992 1758
transcript 1800 1573
exon 587 366
intron 95 67
description:
protein length (aa) 476 392
exons per gene 3.06 3
# of gene models 14344


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.