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Info • Aphanobasidium pseudotsugae OMC1630 v1.0

Status

[September 2018] The Aphanobasidium pseudotsugae OMC1630 genome was sequenced using Pacbio, assembled with Falcon (v1.8.8), and annotated using the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Aphanobasidium pseudotsugae OMC1630 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.20
Sequencing read coverage depth 416.01x
# of contigs 159
# of scaffolds 159
# of scaffolds >= 2Kbp 157
Scaffold N50 21
Scaffold L50 (Mbp) 0.54
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.77, 1.04, 0.98


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45792 44165 96.4%
Ests est.fasta 94128223 92969764 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1943 1684
transcript 1582 1361
exon 243 149
intron 67 59
description:
protein length (aa) 460 375
exons per gene 6.51 5
# of gene models 11120


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.