Info • Apiosordaria backusii CBS 540.89 v1.0

Status

[August 2017] The Apiosordaria backusii CBS 540.89 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Apiosordaria backusii CBS 540.89 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.19
Sequencing read coverage depth 117.53x
# of contigs 37
# of scaffolds 37
# of scaffolds >= 2Kbp 37
Scaffold N50 6
Scaffold L50 (Mbp) 2.88
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.31, 3.88, 3.32


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 29768 29226 98.2%
Ests est.fasta 89672330 89491518 99.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1730 1462
transcript 1552 1296
exon 580 354
intron 109 67
description:
protein length (aa) 458 372
exons per gene 2.67 2
# of gene models 12368


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.