Info • Apiosordaria backusii PSN 263 v1.0

Status

[April 2023] The Apiosordaria backusii PSN 263 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 37.30
Sequencing read coverage depth 155.29x
# of contigs 612
# of scaffolds 590
# of scaffolds >= 2Kbp 429
Scaffold N50 32
Scaffold L50 (Mbp) 0.36
# of gaps 22
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.94, 1.03, 0.99


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41089 40058 97.5%
Ests est.fasta 192153164 190464043 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1888 1640
transcript 1754 1512
exon 676 436
intron 86 64
description:
protein length (aa) 489 400
exons per gene 2.59 2
# of gene models 11881


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.