Status
v1.0 (October 4, 2012): The Apiospora montagnei genome was sequenced using the Illumina platform, assembled with AllPathsLG, and annotated using JGI Annotation pipeline.
Summary statistics for the Apiospora montagnei NRRL 25634
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 47.67 |
| Sequencing read coverage depth | 95.7x |
| # of contigs | 706 |
| # of scaffolds | 686 |
| # of scaffolds >= 2Kbp | 557 |
| Scaffold N50 | 61 |
| Scaffold L50 (Mbp) | 0.23 |
| # of gaps | 20 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.94, 0.72, 0.69 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | Illumina RNAseq assemblies | 50208 | 46460 | 92.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1580 | 1353 |
| transcript | 1426 | 1201 |
| exon | 566 | 352 |
| intron | 104 | 73 |
| description: | ||
| protein length (aa) | 421 | 346 |
| exons per gene | 2.52 | 2 |
| # of gene models | 16992 |
Collaborators
- Joey Spatafora, Ph.D., Dept of Botany & Plant Pathology, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
