Info • Aplosporella prunicola CBS 121.167 v1.0

Status

December 2012. The genome of Aplosporella prunicola CBS 121.167 v1.0 was sequenced using Illumina technology end assembled using AllPathsLG (release version R42874).

Summary statistics for the Aplosporella prunicola v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.82
Sequencing read coverage depth 194x
# of contigs 763
# of scaffolds 334
# of scaffolds >= 2Kbp 243
Scaffold N50 14
Scaffold L50 (Mbp) 0.96
# of gaps 429
% of scaffold length in gaps 1.1%
Three largest Scaffolds (Mbp) 1.60, 1.48, 1.44


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator-assembled Illumina ESTs 37021 36046 97.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1605 1356
transcript 1469 1219
exon 551 346
intron 83 60
description:
protein length (aa) 426 345
exons per gene 2.67 2
# of gene models 12579


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.