Info • Apodospora peruviana CBS 118394 v1.0

Status

[November 2017] The Apodospora peruviana CBS 118394 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Apodospora peruviana v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.02
Sequencing read coverage depth 138.28x
# of contigs 36
# of scaffolds 36
# of scaffolds >= 2Kbp 34
Scaffold N50 4
Scaffold L50 (Mbp) 4.74
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 9.30, 6.45, 4.85


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35392 34803 98.3%
Ests est.fasta 119032811 118952813 99.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1860 1617
transcript 1695 1458
exon 610 376
intron 94 68
description:
protein length (aa) 480 395
exons per gene 2.78 2
# of gene models 13445


Collaborators

Pierre Gladieux, INRA, Montpellier

Francis M. Martin, INRA, France.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.