Info • Armillaria borealis FPL87.14 v1.0

Status

[November 2018] The Armillaria borealis FPL87.14 genome was sequenced with PacBio, assembled with Falcon (v1.8.8), and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the Download section.

Summary statistics for the Armillaria borealis FPL87.14 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 71.69
Sequencing read coverage depth 386.53x
# of contigs 864
# of scaffolds 864
# of scaffolds >= 2Kbp 857
Scaffold N50 50
Scaffold L50 (Mbp) 0.36
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.99, 2.25, 2.24


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 121579 116181 95.6%
Ests est.fasta 173730416 172261368 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1671 1465
transcript 1351 1172
exon 223 136
intron 65 55
description:
protein length (aa) 392 327
exons per gene 6.05 5
# of gene models 19984


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Sahu N, Indic B, Wong-Bajracharya J, Merényi Z, Ke HM, Ahrendt S, Monk TL, Kocsubé S, Drula E, Lipzen A, Bálint B, Henrissat B, Andreopoulos B, Martin FM, Bugge Harder C, Rigling D, Ford KL, Foster GD, Pangilinan J, Papanicolaou A, Barry K, LaButti K, Virágh M, Koriabine M, Yan M, Riley R, Champramary S, Plett KL, Grigoriev IV, Tsai IJ, Slot J, Sipos G, Plett J, Nagy LG
Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria.
Nat Microbiol. 2023 Aug 7;():. doi: 10.1038/s41564-023-01448-1

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.