Status
The genome sequence and gene models of Armillaria cepistipes B5 were not determined by the Joint Genome Institute (JGI), but as a collaborative led by György Sipos (now at the University of Sopron). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please contact László Nagy for permission to use these data in publications.
Summary statistics for the Armillaria cepistipes B5
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 75.83 |
| Sequencing read coverage depth | |
| # of contigs | 346 |
| # of scaffolds | 287 |
| # of scaffolds >= 2Kbp | 287 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 3.29 |
| # of gaps | 59 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.14, 5.88, 4.99 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1658 | 1306 |
| transcript | 1306 | 1047 |
| exon | 237 | 135 |
| intron | 80 | 55 |
| description: | ||
| protein length (aa) | 435 | 349 |
| exons per gene | 5.50 | 4 |
| # of gene models | 23460 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Sipos G, Prasanna AN, Walter MC, O'Connor E, Bálint B, Krizsán K, Kiss B, Hess J, Varga T, Slot J, Riley R, Bóka B, Rigling D, Barry K, Lee J, Mihaltcheva S, LaButti K, Lipzen A, Waldron R, Moloney NM, Sperisen C, Kredics L, Vágvölgyi C, Patrignani A, Fitzpatrick D, Nagy I, Doyle S, Anderson JB, Grigoriev IV, Güldener U, Münsterkötter M, Nagy LG
Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria.
Nat Ecol Evol. 2017 Dec;1(12):1931-1941. doi: 10.1038/s41559-017-0347-8
Sipos G, Prasanna AN, Walter MC, O'Connor E, Bálint B, Krizsán K, Kiss B, Hess J, Varga T, Slot J, Riley R, Bóka B, Rigling D, Barry K, Lee J, Mihaltcheva S, LaButti K, Lipzen A, Waldron R, Moloney NM, Sperisen C, Kredics L, Vágvölgyi C, Patrignani A, Fitzpatrick D, Nagy I, Doyle S, Anderson JB, Grigoriev IV, Güldener U, Münsterkötter M, Nagy LG
Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria.
Nat Ecol Evol. 2017 Dec;1(12):1931-1941. doi: 10.1038/s41559-017-0347-8
Links
László Nagy laboratory at Biological Research Centre of the Hungarian Academy of Sciences
Funding
This project was not sequenced at the JGI.
