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Info • Armillaria cepistipes B5

Status

The genome sequence and gene models of Armillaria cepistipes B5 were not determined by the Joint Genome Institute (JGI), but as a collaborative led by György Sipos (now at the University of Sopron). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please contact László Nagy for permission to use these data in publications.

Summary statistics for the Armillaria cepistipes B5 release are below.
Genome Assembly
Genome Assembly size (Mbp) 75.83
Sequencing read coverage depth
# of contigs 346
# of scaffolds 287
# of scaffolds >= 2Kbp 287
Scaffold N50 8
Scaffold L50 (Mbp) 3.29
# of gaps 59
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.14, 5.88, 4.99


Gene Models ExternalModels
length (bp) of: average median
gene 1658 1306
transcript 1306 1047
exon 237 135
intron 80 55
description:
protein length (aa) 435 349
exons per gene 5.50 4
# of gene models 23460


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.