Info • Armillaria fumosa CBS 122221 v1.0

Status

[June 2020] The Armillaria fumosa CBS 122221 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Armillaria fumosa CBS 122221 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.82
Sequencing read coverage depth 273.72x
# of contigs 54
# of scaffolds 54
# of scaffolds >= 2Kbp 54
Scaffold N50 7
Scaffold L50 (Mbp) 3.85
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.35, 4.79, 4.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 101253 99117 97.9%
Ests est.fasta 125746491 124903725 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1733 1515
transcript 1411 1227
exon 224 137
intron 63 55
description:
protein length (aa) 408 340
exons per gene 6.30 5
# of gene models 16095


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Sahu N, Indic B, Wong-Bajracharya J, Merényi Z, Ke HM, Ahrendt S, Monk TL, Kocsubé S, Drula E, Lipzen A, Bálint B, Henrissat B, Andreopoulos B, Martin FM, Bugge Harder C, Rigling D, Ford KL, Foster GD, Pangilinan J, Papanicolaou A, Barry K, LaButti K, Virágh M, Koriabine M, Yan M, Riley R, Champramary S, Plett KL, Grigoriev IV, Tsai IJ, Slot J, Sipos G, Plett J, Nagy LG
Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria.
Nat Microbiol. 2023 Aug 7;():. doi: 10.1038/s41564-023-01448-1

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.