Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Armillaria gallica 21-2 v1.0

Status

Assembly v1 (Dec 2014) is a minimal draft assembly of Illumina reads using Velvet and AllPathsLG.

Summary statistics for the Armillaria gallica 21-2 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 85.34
Sequencing read coverage depth 41.8x
# of contigs 1529
# of scaffolds 319
# of scaffolds >= 2Kbp 248
Scaffold N50 22
Scaffold L50 (Mbp) 1.04
# of gaps 1210
% of scaffold length in gaps 8.2%
Three largest Scaffolds (Mbp) 4.78, 3.86, 3.63


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 41203 40703 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1459 1217
transcript 1171 955
exon 217 135
intron 68 55
description:
protein length (aa) 339 271
exons per gene 5.40 4
# of gene models 25704


Collaborators

James Anderson, University of Toronto

Joseph Spatafora, Oregon State University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.