Info • Armillaria mellea DSM 3731

Status

The genome sequence and gene prediction of Armillaria mellea were not determined by the JGI, but were recieved from David A. Fitzpatrick (David.Fitzpatrick@nuim.ie) and have been published (pubmed: 23656496). Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for Armillaria mellea DSM 3731 are below.
Genome Assembly
Genome Assembly size (Mbp) 79.55
Sequencing read coverage depth 57.25x
# of contigs 36822
# of scaffolds 29300
# of scaffolds >= 2Kbp 4948
Scaffold N50 680
Scaffold L50 (Mbp) 0.02
# of gaps 7522
% of scaffold length in gaps 15.4%
Three largest Scaffolds (Mbp) 0.64, 0.59, 0.47


Gene Models ExternalModels
length (bp) of: average median
gene 1613 1269
transcript 1246 1002
exon 207 124
intron 75 55
description:
protein length (aa) 415 334
exons per gene 6.02 4
# of gene models 14473


Genome Reference(s)

Funding

This project was not sequenced at the JGI.