Info • Artolenzites elegans CIRM-BRFM 1663 v1.0

Status

Jul 2014. Artolenzites elegans v1.0 is a standard draft assembly produced with Illumina reads and and assembled with AllpathsLG.

Summary statistics for the Artolenzites elegans CIRM1663 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.08
Sequencing read coverage depth 86.1
# of contigs 638
# of scaffolds 243
# of scaffolds >= 2Kbp 213
Scaffold N50 26
Scaffold L50 (Mbp) 0.37
# of gaps 395
% of scaffold length in gaps 1.7%
Three largest Scaffolds (Mbp) 1.56, 1.34, 1.30


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 42289 40741 96.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1788 1512
transcript 1455 1227
exon 254 154
intron 72 59
description:
protein length (aa) 410 334
exons per gene 5.72 4
# of gene models 12851


Collaborators

Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.