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Info • Artolenzites elegans CIRM-BRFM 1122 v1.0

Status

(Mar 2016) The Artolenzites elegans CIRM-BRFM 1122 genome was sequenced using PacBio technology, assembled with Falcon, improved with finisherSC, and polished with Quiver. The genome was annotated using the JGI annotation pipeline.

Summary statistics for the Artolenzites elegans CIRM-BRFM 1122 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.81
Sequencing read coverage depth 97x
# of contigs 94
# of scaffolds 94
# of scaffolds >= 2Kbp 94
Scaffold N50 13
Scaffold L50 (Mbp) 0.72
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.04, 2.64, 1.80


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 106629 104259 97.8%
Ests est.fasta 36153565 35781791 99.0%


Gene Models FilteredModels2
length (bp) of: average median
gene 1801 1528
transcript 1460 1236
exon 247 151
intron 71 59
description:
protein length (aa) 424 346
exons per gene 5.91 5
# of gene models 11945


Collaborators

Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.