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Info • Arthroascus fermentans 17710 v1.0

Status

(Sep 2015) The Arthroascus fermentans 17710 genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010).

Summary statistics for the Arthroascus fermentans 17710 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.37
Sequencing read coverage depth 89.2x
# of contigs 115
# of scaffolds 46
# of scaffolds >= 2Kbp 35
Scaffold N50 5
Scaffold L50 (Mbp) 1.06
# of gaps 69
% of scaffold length in gaps 0.7%
Three largest Scaffolds (Mbp) 2.28, 1.52, 1.30


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters CombestEstClusters 13179 13151 99.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1702 1463
transcript 1640 1407
exon 1211 997
intron 176 102
description:
protein length (aa) 482 393
exons per gene 1.35 1
# of gene models 5449


Collaborators

Joey Spatafora, Oregon State University

Jon Magnuson, Pacific Northwest National Laboratory

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.