Status
(Sep 2015) The Arthroascus fermentans 17710 genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010).
Summary statistics for the Arthroascus fermentans 17710
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 14.37 |
| Sequencing read coverage depth | 89.2x |
| # of contigs | 115 |
| # of scaffolds | 46 |
| # of scaffolds >= 2Kbp | 35 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 1.06 |
| # of gaps | 69 |
| % of scaffold length in gaps | 0.7% |
| Three largest Scaffolds (Mbp) | 2.28, 1.52, 1.30 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | CombestEstClusters | 13179 | 13151 | 99.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1702 | 1463 |
| transcript | 1640 | 1407 |
| exon | 1211 | 997 |
| intron | 176 | 102 |
| description: | ||
| protein length (aa) | 482 | 393 |
| exons per gene | 1.35 | 1 |
| # of gene models | 5449 |
Collaborators
Joey Spatafora, Oregon State University
Jon Magnuson, Pacific Northwest National Laboratory
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
