Status
[October 2016] The Aspergillus alabamensis IBT 12702 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline.
Summary statistics for the Aspergillus alabamensis v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 31.99 |
| Sequencing read coverage depth | 76.1x |
| # of contigs | 243 |
| # of scaffolds | 219 |
| # of scaffolds >= 2Kbp | 188 |
| Scaffold N50 | 14 |
| Scaffold L50 (Mbp) | 0.65 |
| # of gaps | 24 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 1.66, 1.66, 1.60 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 23800 | 23193 | 97.4% |
| Ests | est.fasta | 33812825 | 33465782 | 99.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1814 | 1559 |
| transcript | 1643 | 1405 |
| exon | 515 | 305 |
| intron | 80 | 59 |
| description: | ||
| protein length (aa) | 470 | 394 |
| exons per gene | 3.19 | 3 |
| # of gene models | 11841 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
