Status
[October 2016] The Aspergillus allahabadii CBS 164.63 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline.
Summary statistics for the Aspergillus allahabadii v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 29.78 |
| Sequencing read coverage depth | 93.7x |
| # of contigs | 58 |
| # of scaffolds | 43 |
| # of scaffolds >= 2Kbp | 36 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 1.45 |
| # of gaps | 15 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.08, 2.84, 2.38 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 28472 | 22168 | 77.9% |
| Ests | est.fasta | 41962316 | 39577600 | 94.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1845 | 1598 |
| transcript | 1676 | 1450 |
| exon | 519 | 307 |
| intron | 78 | 58 |
| description: | ||
| protein length (aa) | 481 | 406 |
| exons per gene | 3.23 | 3 |
| # of gene models | 11228 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
