Our systems will be offline for scheduled maintenance in our facility on Wed Aug 24 from 8am until 6pm PDT.
Info • Aspergillus alliaceus CBS 536.65 v1.0

Status

[November 2016] The Aspergillus alliaceus CBS 536.65 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus alliaceus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.17
Sequencing read coverage depth 81.1x
# of contigs 374
# of scaffolds 331
# of scaffolds >= 2Kbp 237
Scaffold N50 24
Scaffold L50 (Mbp) 0.50
# of gaps 43
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.74, 1.72, 1.24


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54171 43466 80.2%
Ests est.fasta 58492154 57500742 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1802 1564
transcript 1610 1382
exon 499 292
intron 88 63
description:
protein length (aa) 449 370
exons per gene 3.23 3
# of gene models 13099


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.