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Info • Aspergillus amylovorus CBS 600.67 v1.0

Status

[July 2016] The Aspergillus amylovorus CBS 600.67 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus amylovorus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.89
Sequencing read coverage depth 86.1x
# of contigs 499
# of scaffolds 462
# of scaffolds >= 2Kbp 361
Scaffold N50 39
Scaffold L50 (Mbp) 0.30
# of gaps 37
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.27, 1.00, 0.70


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 23753 21994 92.6%
Ests est.fasta 42014721 41738608 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1838 1587
transcript 1658 1428
exon 506 299
intron 81 61
description:
protein length (aa) 474 393
exons per gene 3.28 3
# of gene models 12857


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.