Info • Aspergillus arachidicola v1.0

Status

[August 2016] The Aspergillus arachidicola CBS 117612 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus arachidicola v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.76
Sequencing read coverage depth 67.3x
# of contigs 481
# of scaffolds 451
# of scaffolds >= 2Kbp 342
Scaffold N50 34
Scaffold L50 (Mbp) 0.35
# of gaps 30
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.22, 1.01, 0.99


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33532 31177 93.0%
Ests est.fasta 39099390 38128194 97.5%


Gene Models FilteredModels2
length (bp) of: average median
gene 1773 1535
transcript 1584 1368
exon 500 300
intron 90 62
description:
protein length (aa) 455 382
exons per gene 3.17 3
# of gene models 13895


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.