Info • Aspergillus avenaceus IBT 18842 v1.0

Status

[October 2016] The Aspergillus avenaceus IBT 18842 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus avenaceus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.77
Sequencing read coverage depth 73x
# of contigs 1570
# of scaffolds 1528
# of scaffolds >= 2Kbp 1040
Scaffold N50 112
Scaffold L50 (Mbp) 0.08
# of gaps 42
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.44, 0.39, 0.38


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 26116 25091 96.1%
Ests est.fasta 44589250 41716858 93.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1875 1624
transcript 1691 1461
exon 518 308
intron 83 61
description:
protein length (aa) 478 403
exons per gene 3.26 3
# of gene models 11293


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.