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Info • Aspergillus brasiliensis v1.0

Status

The Aspergillus brasiliensis CBS 101740 genome was sequenced using the Illumina platform and subsequently assembled with AllPathsLG release. The genome was annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Aspergillus brasiliensis CBS 101740 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 35.81
Sequencing read coverage depth 156.8
# of contigs 290
# of scaffolds 105
# of scaffolds >= 2Kbp 77
Scaffold N50 6
Scaffold L50 (Mbp) 2.03
# of gaps 185
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 4.54, 3.83, 3.61


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 39851 38069 95.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1743 1475
transcript 1559 1326
exon 494 290
intron 87 63
description:
protein length (aa) 465 387
exons per gene 3.16 3
# of gene models 13000


Collaborators

Ronald de Vries, CBS Fungal Biodiversity Centre, Institute of the Royal Netherlands Academy of Arts and Sciences

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.