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Info • Aspergillus brevijanus CBS 111.46 v1.0

Status

[May 2016] The Aspergillus janus CBS 111.46 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus brevijanus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.00
Sequencing read coverage depth 77.1x
# of contigs 705
# of scaffolds 685
# of scaffolds >= 2Kbp 486
Scaffold N50 49
Scaffold L50 (Mbp) 0.22
# of gaps 20
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.73, 0.71, 0.68


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32985 31727 96.2%
Ests est.fasta 61379143 60744938 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1883 1646
transcript 1705 1483
exon 530 319
intron 83 63
description:
protein length (aa) 479 406
exons per gene 3.22 3
# of gene models 12832


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.