Info • Aspergillus carbonarius ITEM 12550 v1.0

Status

[June 2021] The Aspergillus carbonarius ITEM 12550 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 32.47
Sequencing read coverage depth 175.82x
# of contigs 239
# of scaffolds 233
# of scaffolds >= 2Kbp 122
Scaffold N50 14
Scaffold L50 (Mbp) 0.85
# of gaps 6
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.88, 1.98, 1.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54633 33462 61.2%
Ests est.fasta 150543553 147186069 97.8%
  • Please note: Using BLAST, unmapped RNA contigs were found to hit Sulfolobus genus and Vibrio genus, suggesting that the RNA library was contaminated.

Gene Models FilteredModels1
length (bp) of: average median
gene 1921 1673
transcript 1750 1521
exon 537 328
intron 78 60
description:
protein length (aa) 494 416
exons per gene 3.26 3
# of gene models 11216


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.