Status
[December 2023] The Aspergillus carbonarius ITEM 5010 genome assembly v3 (14 Dec 2009) is a 'hybrid' assembly of 454 and Sanger gDNA reads improved by the JGI Finishing Pipeline. Bacterial and mitochondrial scaffolds were removed from v3 assembly. The Aspergillus carbonarius ITEM 5010 v4.1 is a reannotation of the cleaned v3 assembly using the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.08 |
| Sequencing read coverage depth | 17.78x |
| # of contigs | 1220 |
| # of scaffolds | 846 |
| # of scaffolds >= 2Kbp | 238 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 1.83 |
| # of gaps | 374 |
| % of scaffold length in gaps | 5.6% |
| Three largest Scaffolds (Mbp) | 3.09, 3.05, 2.58 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | 454 reads from strain ITEM 5110 + Illumina reads from strain ITEM 11822 | 148152930 | 146425465 | 98.8% |
| Other | JGI_454_isotigs | 14726 | 14551 | 98.8% |
| Other | JGI_RNA_contigs_ITEM_11822 | 36960 | 34577 | 93.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1961 | 1666 |
| transcript | 1759 | 1506 |
| exon | 519 | 312 |
| intron | 86 | 61 |
| description: | ||
| protein length (aa) | 503 | 414 |
| exons per gene | 3.39 | 3 |
| # of gene models | 11710 |
Links
- JGI EcoGroup Portals: Plant_Pathogens
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Eurotiales Aspergillus
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
