Status
[October 2021] The Aspergillus caespitosus CBS 103.45 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 31.99 |
| Sequencing read coverage depth | 315.32x |
| # of contigs | 136 |
| # of scaffolds | 132 |
| # of scaffolds >= 2Kbp | 101 |
| Scaffold N50 | 15 |
| Scaffold L50 (Mbp) | 0.69 |
| # of gaps | 4 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.80, 1.43, 1.40 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 23788 | 22643 | 95.2% |
| Ests | est.fasta | 7667388 | 6501894 | 84.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1882 | 1588 |
| transcript | 1695 | 1440 |
| exon | 514 | 294 |
| intron | 83 | 59 |
| description: | ||
| protein length (aa) | 523 | 439 |
| exons per gene | 3.30 | 3 |
| # of gene models | 10889 |
Collaborators
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
