Info • Aspergillus caespitosus CBS 103.45 v1.0

Status

[October 2021] The Aspergillus caespitosus CBS 103.45 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline.

Genome Assembly
Genome Assembly size (Mbp) 31.99
Sequencing read coverage depth 315.32x
# of contigs 136
# of scaffolds 132
# of scaffolds >= 2Kbp 101
Scaffold N50 15
Scaffold L50 (Mbp) 0.69
# of gaps 4
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.80, 1.43, 1.40


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 23788 22643 95.2%
Ests est.fasta 7667388 6501894 84.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1882 1588
transcript 1695 1440
exon 514 294
intron 83 59
description:
protein length (aa) 523 439
exons per gene 3.30 3
# of gene models 10889


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.