Status
Assembly v1 (January 2014) is a minimal draft assembly of PacBio gDNA reads. A total of 62 scaffolds and 28.3 Mbp were assembled using HBAR.
Summary statistics for the Aspergillus campestris IBT
28561 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 28.26 |
| Sequencing read coverage depth | 26x |
| # of contigs | 62 |
| # of scaffolds | 62 |
| # of scaffolds >= 2Kbp | 56 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 1.70 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 5.02, 2.25, 2.24 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 22457 | 22320 | 99.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1838 | 1566 |
| transcript | 1636 | 1400 |
| exon | 508 | 298 |
| intron | 93 | 64 |
| description: | ||
| protein length (aa) | 480 | 402 |
| exons per gene | 3.22 | 3 |
| # of gene models | 9764 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Kjærbølling I, Vesth TC, Frisvad JC, Nybo JL, Theobald S, Kuo A, Bowyer P, Matsuda Y, Mondo S, Lyhne EK, Kogle ME, Clum A, Lipzen A, Salamov A, Ngan CY, Daum C, Chiniquy J, Barry K, LaButti K, Haridas S, Simmons BA, Magnuson JK, Mortensen UH, Larsen TO, Grigoriev IV, Baker SE, Andersen MR
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species.
Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E753-E761. doi: 10.1073/pnas.1715954115
Kjærbølling I, Vesth TC, Frisvad JC, Nybo JL, Theobald S, Kuo A, Bowyer P, Matsuda Y, Mondo S, Lyhne EK, Kogle ME, Clum A, Lipzen A, Salamov A, Ngan CY, Daum C, Chiniquy J, Barry K, LaButti K, Haridas S, Simmons BA, Magnuson JK, Mortensen UH, Larsen TO, Grigoriev IV, Baker SE, Andersen MR
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species.
Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E753-E761. doi: 10.1073/pnas.1715954115
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
