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Info • Aspergillus campestris IBT 28561 v1.0

Status

Assembly v1 (January 2014) is a minimal draft assembly of PacBio gDNA reads. A total of 62 scaffolds and 28.3 Mbp were assembled using HBAR.

Summary statistics for the Aspergillus campestris IBT 28561 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.26
Sequencing read coverage depth 26x
# of contigs 62
# of scaffolds 62
# of scaffolds >= 2Kbp 56
Scaffold N50 6
Scaffold L50 (Mbp) 1.70
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.02, 2.25, 2.24


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 22457 22320 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1838 1566
transcript 1636 1400
exon 508 298
intron 93 64
description:
protein length (aa) 480 402
exons per gene 3.22 3
# of gene models 9764


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.