Status
[November 2016] The Aspergillus candidus CBS 102.13 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Aspergillus candidus v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 27.32 |
| Sequencing read coverage depth | 84x |
| # of contigs | 291 |
| # of scaffolds | 268 |
| # of scaffolds >= 2Kbp | 168 |
| Scaffold N50 | 23 |
| Scaffold L50 (Mbp) | 0.39 |
| # of gaps | 23 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.02, 0.99, 0.96 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 21504 | 21040 | 97.8% |
| Ests | est.fasta | 52879166 | 37968633 | 71.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1902 | 1653 |
| transcript | 1715 | 1488 |
| exon | 537 | 322 |
| intron | 87 | 64 |
| description: | ||
| protein length (aa) | 481 | 407 |
| exons per gene | 3.19 | 3 |
| # of gene models | 9641 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Kjærbølling I, Vesth TC, Frisvad JC, Nybo JL, Theobald S, Kuo A, Bowyer P, Matsuda Y, Mondo S, Lyhne EK, Kogle ME, Clum A, Lipzen A, Salamov A, Ngan CY, Daum C, Chiniquy J, Barry K, LaButti K, Haridas S, Simmons BA, Magnuson JK, Mortensen UH, Larsen TO, Grigoriev IV, Baker SE, Andersen MR
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species.
Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E753-E761. doi: 10.1073/pnas.1715954115
Kjærbølling I, Vesth TC, Frisvad JC, Nybo JL, Theobald S, Kuo A, Bowyer P, Matsuda Y, Mondo S, Lyhne EK, Kogle ME, Clum A, Lipzen A, Salamov A, Ngan CY, Daum C, Chiniquy J, Barry K, LaButti K, Haridas S, Simmons BA, Magnuson JK, Mortensen UH, Larsen TO, Grigoriev IV, Baker SE, Andersen MR
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species.
Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):E753-E761. doi: 10.1073/pnas.1715954115
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
