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Info • Aspergillus candidus CBS 102.13 v1.0

Status

[November 2016] The Aspergillus candidus CBS 102.13 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus candidus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.32
Sequencing read coverage depth 84x
# of contigs 291
# of scaffolds 268
# of scaffolds >= 2Kbp 168
Scaffold N50 23
Scaffold L50 (Mbp) 0.39
# of gaps 23
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.02, 0.99, 0.96


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 21504 21040 97.8%
Ests est.fasta 52879166 37968633 71.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1902 1653
transcript 1715 1488
exon 537 322
intron 87 64
description:
protein length (aa) 481 407
exons per gene 3.19 3
# of gene models 9641


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.