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Info • Aspergillus capensis CBS 138188 v1.0

Status

[March 2017] The Aspergillus capensis CBS 138188 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus capensis CBS 138188 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.93
Sequencing read coverage depth 71.9x
# of contigs 551
# of scaffolds 529
# of scaffolds >= 2Kbp 461
Scaffold N50 59
Scaffold L50 (Mbp) 0.16
# of gaps 22
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.82, 0.63, 0.58


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 21431 21099 98.5%
Ests est.fasta 24304637 18196809 74.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1820 1575
transcript 1635 1410
exon 505 298
intron 85 62
description:
protein length (aa) 474 400
exons per gene 3.24 3
# of gene models 11706


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.