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Info • Aspergillus carlsbadensis CBS 123894 v1.0

Status

[March 2017] The Aspergillus carlsbadensis CBS 123894 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus carlsbadensis CBS 12389 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.46
Sequencing read coverage depth 72.1x
# of contigs 270
# of scaffolds 254
# of scaffolds >= 2Kbp 240
Scaffold N50 36
Scaffold L50 (Mbp) 0.33
# of gaps 16
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.56, 0.91, 0.89


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 31788 31165 98.0%
Ests est.fasta 38852117 37998930 97.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1828 1608
transcript 1660 1453
exon 528 321
intron 80 61
description:
protein length (aa) 470 400
exons per gene 3.14 3
# of gene models 14289


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.